That's an excellent point! As I'm not specifically constrained for height perhaps a 4U one would make more sense as it would allow for more airflow, a larger CPU cooler, a full ATX PSU and full height PCIe cards.
https://www.scan.co.uk/products/4u-short-length-server-case-16x-35-hot-swappable-sata-sas-drive-bays-6gb-s-minisas-2x-525-bays
According to the description that case supports 16 SATA/SAS drives. I read about the Dell H200 being a cheap option for up to eight SAS drives, if that is still a good option, can I build the machine with one and add another later?