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Unraid wont boot if i plug external USB drives into a USB 3 PCI Card

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Hello.

 

I have a SuperMicro X10SLL-F motherboard with a USB 3 Host Controller, LSI SAS2008 HBA and a Graphics Card in the PCI Slots.

 

It boots just fine off the internal USB from my Unraid Flash Drive but whenever i plug external disks (there are alot) into the USB PCI card (for a VM i run), it fails to boot and i cannot work out a way to get the BIOS to ignore the External USB drives.

Can anyone help?

 

if it helps:
https://www.supermicro.com/en/products/motherboard/X10SLL-F

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