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Files not being picked up by plex after running xfs_repair

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I recently upgraded form 6.11.5 to 6.12.10, which has caused some issues with files disapperaing, and everything being read-only. I downgraded back to 6.11.5 and then had to run xfs_repair on 2 of the drives, upgraded again last night and the missing files have appeared again - but plex/sonarr/etc cannot see them mounted using cifs (they exist when running ls though). The files are all actually there, as playing them mounted over cifs from my laptop works fine. Any ideas what might have happened?

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