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Odd Behaviour from Server - Docker not working, Unmountable HDDs etc

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HI All,

 

I have been having some issues with my server over the last couple of days and have not been able to resolve the issues. In Docker, for some reason Radarr refuses to stay started, whenever I start it, after a couple of minuted it moves to Stopped mode. Sonarr has the green play button, however it doesn't launch the app when I click on Web UI (or access via the IP). I have a couple of Docker apps that stay in Stopped mode and when I do start them they say " Server Error , Execution Error". Or they do the same thing as Radarr.

I also experienced this weird error where one of my drives was unmountable, I did the XFS repair and that fixed it though. I am also noticing that some of my files are going missing. My sonarr was pretty clean, however with all this happening it is full of missing files and starts to search for them. I have attached the logs to the thread in a hope that I can get some assistance.

 

Thanks in Advance!

 

datavault972-diagnostics-20250512-2113.zip

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  • FIX

  • Rebuilding an unmountable disk will result in an unmountable disk, not much point, and you can destroy the good filesystem, there are errors in multiple disks, check/replace cables for those disks, es

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  • Author

Not sure if this is allowed but bump

  • Community Expert
May 12 20:48:05 DataVault972 kernel: md: disk3 read error, sector=10737418248
May 12 20:48:05 DataVault972 kernel: XFS (md3p1): log I/O error -5
May 12 20:48:05 DataVault972 kernel: XFS (md3p1): Filesystem has been shut down due to log error (0x2).

 

Disk3 had read errors, and since disk5 is disabled, it cannot be emulated, check/replace cables for this disk, also, and since you didn't mention it, are you aware that disk5 is disabled?

  • Author

Thanks for the response, I did, it has been like this for a bit and I am not exactly sure how to resolve the issues, before typing this message and I went to my HDDs and reseated all cables to ensure that nothing is loose.

On 5/13/2025 at 10:04 AM, JorgeB said:
May 12 20:48:05 DataVault972 kernel: md: disk3 read error, sector=10737418248
May 12 20:48:05 DataVault972 kernel: XFS (md3p1): log I/O error -5
May 12 20:48:05 DataVault972 kernel: XFS (md3p1): Filesystem has been shut down due to log error (0x2).

 

Disk3 had read errors, and since disk5 is disabled, it cannot be emulated, check/replace cables for this disk, also, and since you didn't mention it, are you aware that disk5 is disabled?

image.png.ed3f804376456ad3cc24e06536d6c905.png

Edited by Tuntira

  • Author

I also got the "Unmountable: Wrong or No File System" Error on that drive

 

firefox_XOmTeryn4E.png

  • Community Expert

Post new diags please.

  • Community Expert

No disk errors so far, emulated disk5 has filesystem corruption:

 

May 15 19:13:38 DataVault972 kernel: XFS (md5p1): Corruption detected. Unmount and run xfs_repair

 

Check filesystem

  • Author
19 minutes ago, JorgeB said:

No disk errors so far, emulated disk5 has filesystem corruption:

 

May 15 19:13:38 DataVault972 kernel: XFS (md5p1): Corruption detected. Unmount and run xfs_repair

 

Check filesystem

 

SO I got to the check filesysystem part and got this...

 

 

firefox_3wcW3RfJPW.png

  • Author
Phase 1 - find and verify superblock...
Phase 2 - using internal log
        - zero log...
Log inconsistent or not a log (last==0, first!=1)
empty log check failed
zero_log: cannot find log head/tail (xlog_find_tail=22)
        - scan filesystem freespace and inode maps...
        - found root inode chunk
Phase 3 - for each AG...
        - scan (but don't clear) agi unlinked lists...
        - process known inodes and perform inode discovery...
        - agno = 0
        - agno = 1
        - agno = 2
        - agno = 3
        - agno = 4
        - agno = 5
        - agno = 6
        - agno = 7
        - process newly discovered inodes...
Phase 4 - check for duplicate blocks...
        - setting up duplicate extent list...
        - check for inodes claiming duplicate blocks...
        - agno = 0
        - agno = 3
        - agno = 2
        - agno = 4
        - agno = 5
        - agno = 6
        - agno = 7
        - agno = 1
No modify flag set, skipping phase 5
Phase 6 - check inode connectivity...
        - traversing filesystem ...
        - traversal finished ...
        - moving disconnected inodes to lost+found ...
Phase 7 - verify link counts...
Maximum metadata LSN (20:1450) is ahead of log (0:0).
Would format log to cycle 23.
No modify flag set, skipping filesystem flush and exiting.

 

  • Author
9 minutes ago, trurl said:

FIX

Awesome, So I did that and everything looked to have workout, however, that drive is still disabled, how does one enable the drive\

 

  • Author

I Am currently getting the "All exiting data on this device will be OVERWRITTEN when array is Started" Notification!

Not sure why but What I did was the following:

 

Stop the array, unassign the disk, start the array in maintenance mode, stop it again, reassign the drive to the same slot. The idea is to start the array temporarily with the drive “missing” so it changes from “disabled” to “emulated” status, then to stop it and “replace” the drive to get it back to “active” status.

 

It was a suggestion off reddit. Anyone know if it is safe to restart the array, I don't want to lose the data on there

 

  • Community Expert

Unassign the disk, start the array in normal (not maintenance) mode, and post new diagnostics

  • Community Expert

Emulated disk5 is mounted with plenty of data. Should be OK to reassign then start the array to rebuild.

 

Looks like you have a lost+found share on disk1 from a previous repair. Have you examined its contents?

  • Community Expert
6 minutes ago, trurl said:

lost+found share on disk1

What do you get from command line with this?

du -h /mnt/disk1/lost+found

 

  • Author

Ok so I mounted it and all seems ok! It does however have a warning icon, should I be worried about that?firefox_Lr0rKcLGjJ.thumb.png.5ec1a28ffce2905fe1811be12713e428.png

 

When I run this "du -h /mnt/disk1/lost+found"

I get 

 

"19G du -h /mnt/disk1/lost+found"

  • Community Expert
1 minute ago, Tuntira said:

I mounted it

You mean you reassigned it. "Mounted" has a special meaning. It means the OS has loaded the filesystem to allow access.

 

The warning icon (mouseover) just means the disk is still emulated. Emulation is how it gets the data for the rebuild using the parity calculation with all the other disks.

https://docs.unraid.net/unraid-os/overview/nas/#parity-protected-array

It will be emulated until rebuild completes.

7 minutes ago, Tuntira said:

19G

The results of that command show you have 19 GB of lost+found on disk1.

 

Sometimes repair can't determine what folder a file belongs in, or what name a folder/file should have. Linux 'file' command can help you figure out what kind of data is in a particular file so you can try to open it in an appropriate application and see if you can identify it.

21 minutes ago, trurl said:

Have you examined its contents?

 

 

  • Author

Ah I see, so I am guessing that I need to let it do it's thing! I will do that.

With regards to the lost+found, I haven't as yet, I went to the folder and it is currently loading. see attached

firefox_hCdpWkHNMQ.png

  • Author

HI @trurl I am back up and running, that Disk 5 issue was the biggest problem I had! Many thanks!

  • Author
21 hours ago, Tuntira said:

Ah I see, so I am guessing that I need to let it do it's thing! I will do that.

With regards to the lost+found, I haven't as yet, I went to the folder and it is currently loading. see attached

 

 

Unfortunately this didn't give any info whatsoever

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