****** Please use the Official Template for Photostructure instead of this one *******
A template for the official Photostructure docker.
(let me know if it needs any tweaks)
On the settings - pay attention to the option to leave photos in original location or to copy them to the new library location.
@DuzAwe try the info tool to see if PhotoStructure is unexpectedly filtering out your directories or files. This article may help as well.
If you're still stuck, email me your logs and I can take a look at what's going on.