I'm having the same issue with the new sickrage plg.
I've tried uninstalling it all together and renaming the config directory.
It starts generating the new config directory and the config.ini but stops for some reason and fails.
This is the activity log:
2016-01-23 17:26:34 [iNFO] Running install script for SickRage
2016-01-23 17:26:34 [iNFO] Creating default plugin config file
2016-01-23 17:26:34 [iNFO] Verifying plugin config file elements
2016-01-23 17:26:34 [iNFO] Verification OK!
2016-01-23 17:26:34 [iNFO] Installing control file
2016-01-23 17:26:34 [iNFO] Control file install OK!
2016-01-23 17:26:34 [iNFO] Removing Windows carriage characters from important files
2016-01-23 17:26:34 [iNFO] Cleaning up temp files and folders
2016-01-23 17:26:34 [iNFO] **************************
2016-01-23 17:26:34 [iNFO] Install complete!
2016-01-23 17:26:34 [iNFO] **************************
2016-01-23 17:27:42 [iNFO] *** Write Export Initiated ***
2016-01-23 17:27:42 [iNFO] Updating dependencies
2016-01-23 17:27:42 [iNFO] Dependency install file has correct MD5
2016-01-23 17:27:42 [iNFO] Using /mnt/cache/.PhAzE-Common for dependency directory
2016-01-23 17:27:42 [iNFO] Dependencies updated successfully
2016-01-23 17:27:42 [iNFO] Updating export file
2016-01-23 17:27:42 [iNFO] Updating shorcut file
2016-01-23 17:29:24 [iNFO] *** Apply - Disable Initiated ***
2016-01-23 17:29:24 [iNFO] Stopping SickRage...
2016-01-23 17:29:24 [iNFO] Stop OK: Already stopped
2016-01-23 17:29:25 [iNFO] Updating settings
2016-01-23 17:29:25 [iNFO] Updating plugin config file
2016-01-23 17:29:25 [iNFO] Updating dependencies
2016-01-23 17:29:25 [iNFO] Dependency install file has correct MD5
2016-01-23 17:29:25 [iNFO] Using /mnt/cache/.PhAzE-Common for dependency directory
2016-01-23 17:29:26 [iNFO] Dependencies updated successfully
2016-01-23 17:29:26 [iNFO] Updating export file
2016-01-23 17:29:26 [iNFO] Updating shorcut file
2016-01-23 17:29:26 [iNFO] Updating application config file
2016-01-23 17:29:26 [ERROR] Config update failed: Directory missing
2016-01-23 17:29:39 [iNFO] *** Button Start Initiated ***
2016-01-23 17:29:39 [iNFO] Starting SickRage...
2016-01-23 17:29:39 [iNFO] Updating dependencies
2016-01-23 17:29:39 [iNFO] Dependency install file has correct MD5
2016-01-23 17:29:39 [iNFO] Using /mnt/cache/.PhAzE-Common for dependency directory
2016-01-23 17:29:40 [iNFO] Dependencies updated successfully
2016-01-23 17:29:40 [iNFO] Updating export file
2016-01-23 17:29:40 [iNFO] Updating shorcut file
2016-01-23 17:29:40 [iNFO] Updating application directories
2016-01-23 17:29:40 [iNFO] Creating application config file
2016-01-23 17:29:51 [ERROR] Start failed: No PID created
The Logs directory is created under the config directory, but no logs inside.