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Inconsistent CPU usage


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Every once in awhile my system will slow down to a crawl.  I am just running Plex, Sonarr, CP, and Deluge.  My CPU will almost always show between 50-100% even when Plex isn't being used.  I telnet in and run 'top' and I also check cadvisor and neither show significant CPU usage.  What is the best way to monitor resources on this system?  Is there any way to monitor disk activity as well?

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