Snorlax

I think I found the source of my problem with FAH halting. It has to do with the number of cores being used. https://foldingforum.org/viewtopic.php?f=72&t=31091

My Folding@Home container appears to keep halting. Not sure why, 07:12:54:WU00:FS00:Removing old file './work/00/logfile_01-20191013-064153.txt' 07:12:54:WU00:FS00:Running FahCore: /opt/fah/usr/bin/FAHCoreWrapper /config/cores/cores.foldingathome.org/Linux/AMD64/Core_a7.fah/FahCore_a7 -dir 00 -suffix 01 -version 704 -lifeline 30 -checkpoint 15 -np 23 07:12:54:WU00:FS00:Started FahCore on PID 101 07:12:54:WU00:FS00:Core PID:105 07:12:54:WU00:FS00:FahCore 0xa7 started 07:12:55:WU00:FS00:0xa7:*********************** Log Started 2019-10-13T07:12:54Z *********************** 07:12:55:WU00:FS00:0xa7:************************** Gromacs Folding@home Core *************************** 07:12:55:WU00:FS00:0xa7: Type: 0xa7 07:12:55:WU00:FS00:0xa7: Core: Gromacs 07:12:55:WU00:FS00:0xa7: Website: https://foldingathome.org/ 07:12:55:WU00:FS00:0xa7: Copyright: (c) 2009-2018 foldingathome.org 07:12:55:WU00:FS00:0xa7: Author: Joseph Coffland <[email protected]> 07:12:55:WU00:FS00:0xa7: Args: -dir 00 -suffix 01 -version 704 -lifeline 101 -checkpoint 15 -np 23 07:12:55:WU00:FS00:0xa7: Config: <none> 07:12:55:WU00:FS00:0xa7:************************************ Build ************************************* 07:12:55:WU00:FS00:0xa7: Version: 0.0.17 07:12:55:WU00:FS00:0xa7: Date: Apr 27 2018 07:12:55:WU00:FS00:0xa7: Time: 19:09:25 07:12:55:WU00:FS00:0xa7: Repository: Git 07:12:55:WU00:FS00:0xa7: Revision: 21359963583d09ec2063ef946399441c4df4ccd7 07:12:55:WU00:FS00:0xa7: Branch: master 07:12:55:WU00:FS00:0xa7: Compiler: GNU 6.3.0 20170516 07:12:55:WU00:FS00:0xa7: Options: -std=gnu++98 -O3 -funroll-loops 07:12:55:WU00:FS00:0xa7: Platform: linux2 4.14.0-3-amd64 07:12:55:WU00:FS00:0xa7: Bits: 64 07:12:55:WU00:FS00:0xa7: Mode: Release 07:12:55:WU00:FS00:0xa7: SIMD: sse2 07:12:55:WU00:FS00:0xa7:************************************ System ************************************ 07:12:55:WU00:FS00:0xa7: CPU: Intel(R) Xeon(R) CPU X5670 @ 2.93GHz 07:12:55:WU00:FS00:0xa7: CPU ID: GenuineIntel Family 6 Model 44 Stepping 2 07:12:55:WU00:FS00:0xa7: CPUs: 24 07:12:55:WU00:FS00:0xa7: Memory: 94.48GiB 07:12:55:WU00:FS00:0xa7:Free Memory: 68.20GiB 07:12:55:WU00:FS00:0xa7: Threads: POSIX_THREADS 07:12:55:WU00:FS00:0xa7: OS Version: 4.18 07:12:55:WU00:FS00:0xa7:Has Battery: false 07:12:55:WU00:FS00:0xa7: On Battery: false 07:12:55:WU00:FS00:0xa7: UTC Offset: 0 07:12:55:WU00:FS00:0xa7: PID: 105 07:12:55:WU00:FS00:0xa7: CWD: /config/work 07:12:55:WU00:FS00:0xa7: OS: Linux 4.18.20-unRAID x86_64 07:12:55:WU00:FS00:0xa7: OS Arch: AMD64 07:12:55:WU00:FS00:0xa7:******************************************************************************** 07:12:55:WU00:FS00:0xa7:Project: 14089 (Run 169, Clone 2, Gen 0) 07:12:55:WU00:FS00:0xa7:Unit: 0x000000000002894b5d9248759a580dbd 07:12:55:WU00:FS00:0xa7:Digital signatures verified 07:12:55:WU00:FS00:0xa7:Reducing thread count from 23 to 22 to avoid domain decomposition by a prime number > 3 07:12:55:WU00:FS00:0xa7:Reducing thread count from 22 to 21 to avoid domain decomposition with large prime factor 11 07:12:55:WU00:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 21 07:12:55:WU00:FS00:0xa7:Steps: first=0 total=1250000 07:13:02:WU00:FS00:0xa7:ERROR: 07:13:02:WU00:FS00:0xa7:ERROR:------------------------------------------------------- 07:13:02:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown 07:13:02:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754 07:13:02:WU00:FS00:0xa7:ERROR: 07:13:02:WU00:FS00:0xa7:ERROR:Fatal error: 07:13:02:WU00:FS00:0xa7:ERROR:5 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension y. 07:13:02:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated. 07:13:02:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS 07:13:02:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors 07:13:02:WU00:FS00:0xa7:ERROR:------------------------------------------------------- 07:13:02:WU00:FS00:0xa7:Completed 1 out of 1250000 steps (0%) 07:13:07:WU00:FS00:0xa7:ERROR: 07:13:07:WU00:FS00:0xa7:ERROR:------------------------------------------------------- 07:13:07:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown 07:13:07:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754 07:13:07:WU00:FS00:0xa7:ERROR: 07:13:07:WU00:FS00:0xa7:ERROR:Fatal error: 07:13:07:WU00:FS00:0xa7:ERROR:5 particles communicated to PME rank 5 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x. 07:13:07:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated. 07:13:07:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS 07:13:07:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors 07:13:07:WU00:FS00:0xa7:ERROR:------------------------------------------------------- 07:13:12:WU00:FS00:0xa7:ERROR: 07:13:12:WU00:FS00:FahCore returned: INTERRUPTED (102 = 0x66)