I was able to find the device log but can't seem to locate it now...
It was complaining about possible corruption and to run fsck. I took the drive out and tried doing a scan and repair on a Windows machine, but that failed. I have since replaced the drive with a smaller one (the one I was having issues was a brand new Samsung 128gb, now using 32GB Kingston) and as of now, no issues. There were a lot of what appeared to be junk files on the other drive with very odd timestamps and names. Not entirely sure how corruption would have occurred so soon, this build has only been running for 4 days.