Ok, I know a little bit more.
The HBA only works with a pcie card in the slot that is connected to the X16 slot. This slot then only works at x8:
LnkSta: Speed 16GT/s, Width x8 (downgraded)
Removing the pcie card from the switched slot, the mobo hangs at code 94 pre bios. I have talked to Supermicro Support, which by the way responds very quickly these days, Highpoint products are not validated. But they are consulting bios engineer.
This means that the HBA is running 6 x M.2´s at x8. And it is some switching between the slots as well. The copy test was done between 4 of the M.2´s, The last 2 is only sitting as unassigned devices.