appdata doesn't have anything to do with VMs normally so I don't know what you have done there.
The only things plex stores are its library, which can get somewhat large but nothing like what you have. Transcodes are also stored as a subdirectory of that library by default but that can be changed.
Other than that plex doesn't really write anything, except possibly DVR, which should be on another share. And any media you want plex to play should be on other shares and not appdata.
Looking again at your diagnostics it seems you don't actually have any shares except appdata, domains, isos and system. These shares are not intended for any of your media, downloads, or any other files you may want to write to your server.
appdata is strictly for the working storage of your containers. By working storage, I mean anything it might need to keep track of what it is doing. Plex, for example, has a database that it keeps track of where all of your media is stored and other information about that media. The media itself does not belong in appdata.
domains is strictly for your VMs. This is where the OS for each of your VMs goes. The VMs will typically access storage from other shares on your Unraid server.
isos is where the installation files for your VMs go. This will be where you save downloaded distributions of whatever OS you want to install as a VM.
system is where your docker image and libvirt images go. The docker image actually contains the downloaded executable code for each of your docker containers.
You should not be storing anything in these shares. They are for the system to use to manage your dockers and VMs.
Sounds like you need to rework almost everything. Do you have backups that would allow you to just start over?