It actually will. IE: CA doesn't care how you install a plugin or a docker app. But, you just ran across an "issue" which I just found the other day (I accidentally wound up installing one of his plugins) and is on my to-do list. (And thus far, it seems to be just PhAzE's plugins affected)
Namely, CA checks the URL of the plugin to figure out the application it refers to.
The application feed for his plugins lists the URLs as https://raw.githubusercontent.com/.....
The plugin file lists the URL as https://github.com/....
On installation, it doesn't matter as the github.com is automatically redirected to raw.githubusercontent.com, but CA misses that the plugin is installed (whether its installed via CA or not). (But funny enough, CA does know if you uninstall it to put it into the Previous Apps section...
EDIT: technically, its the plg file that listing the incorrect URL, as its url is the one subject to redirection, but I'll account for it in CA.
EDIT2: FCP recognizes PhAzE's plugins, but on a check of the coding, FCP is a more relaxed test to determine the plugin, and I'll have to fix that in the future.