Our image doesn't use acme, which is a third party script. We use the official client, certbot.
Honestly, GoDaddy is not very good at DNS services. I'd take cloudflare over any of those domain registrar provided DNS service any day. Cloudflare is free, very easy to switch to and propagates changes almost instantly.
You're better off using cloudflare as your dns provider.
I have domains bought from various providers like dynadot and name cheap, but they all point the name servers to cloudflare, which handles dns for me