It's a dual expander model, primary ports go to one expander, secondary ports to the other, with Unraid you only need to use the primary.
No, for best performance you can connect one HBA using dual link to the front backplane, Supermicro recommends using primary ports J1 and J2, but it should work with any two ports on the same expander, also the 9211 with dual link will bottleneck due to being PCIe 2.0, a PCIe 3.0 HBA like the 9207-8i or 9300-8i would be better, assuming the board/CPU supports PCIe 3.0.
Not sure the seconds backplane supports dual link, you can test or post the model for that one to see if I can find any info, though with half the drives it will have the same approximate bandwidth with a single link as the front one with dual, and Unraid max array size is 30 devices, so you'll never need to use the 36 devices simultaneously.