6 Bytes is probably not consequential, but if you click on the view button to the right of Disk1 on the main GUI page, you can browse what exactly is in the appdata folder and make a decision on whether it seems important or not.
Short answer, stop the plex container, move all the files and folders that are currently in /mnt/plex-meta-data into a newly created /mnt/plex-meta-data/appdata/plex/ folder, change the host mapping on the plex container, start it back up.
There are many different ways to move data around on the server, are you familiar / comfortable with one in particular? mc at the console would be my pick, there is a newly launched plugin that adds file management into the main GUI view buttons, and there are ways to move data directly over network shares as well, but that could possibly cause other issues.